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For many animals, migration is an important strategy for navigating seasonal bottlenecks in resource availability. In the savannas of eastern Africa, herds of grazing animals, including blue wildebeest (Connochaetes taurinus), Thomson's gazelle (Eudorcas thomsonii), and plains zebra (Equus quagga), travel hundreds of kilometers annually tracking suitable forage and water. However, we know nearly nothing about migration among the extinct species that often dominated Late Pleistocene communities. Using serially sampled 87Sr/86Sr and δ13C, we characterize the prehistoric movement and diet of the enigmatic wildebeest Rusingoryx atopocranion from two localities (Karungu and Rusinga Island) in the Lake Victoria Basin of western Kenya. We find clear evidence for migration in all four individuals studied, with three 87Sr/86Sr series demonstrating high-amplitude fluctuations and all falling outside the modeled isoscape 87Sr/86Sr ranges of the fossil localities from which they were recovered. This suggests that R. atopocranion exhibited migratory behavior comparable to that of its closest living relatives in the genus Connochaetes. Additionally, individuals show seasonally-variable δ13C, with a higher browse intake than modern and fossil eastern African alcelaphins indicating behavioral differences among extinct taxa otherwise unrecognized by comparison with extant related species. That this species was highly migratory aligns with its morphology matching that of an open grassland migrant: it had open-adapted postcranial morphology along with a unique cranial structure convergent with lambeosaurine dinosaurs for calling long distances. We further hypothesize that its migratory behavior may be linked to its extinction, as R. atopocranion disappears from the Lake Victoria Basin fossil sequence coincident with the refilling of Lake Victoria sometime after 36 ka, potentially impeding its past migratory routes. This study characterizes migration in an extinct eastern African species for the first time and shapes our ecological understanding of this unique bovid and the ecosystems in which Middle Stone Age humans lived. 

Abstract Multiple lines of genetic and archaeological evidence suggest that there were major demographic changes in the terminal Late Pleistocene epoch and early Holocene epoch of sub-Saharan Africa 1–4 . Inferences about this period are challenging to make because demographic shifts in the past 5,000 years have obscured the structures of more ancient populations 3,5 . Here we present genome-wide ancient DNA data for six individuals from eastern and south-central Africa spanning the past approximately 18,000 years (doubling the time depth of sub-Saharan African ancient DNA), increase the data quality for 15 previously published ancient individuals and analyse these alongside data from 13 other published ancient individuals. The ancestry of the individuals in our study area can be modelled as a geographically structured mixture of three highly divergent source populations, probably reflecting Pleistocene interactions around 80–20 thousand years ago, including deeply diverged eastern and southern African lineages, plus a previously unappreciated ubiquitous distribution of ancestry that occurs in highest proportion today in central African rainforest hunter-gatherers. Once established, this structure remained highly stable, with limited long-range gene flow. These results provide a new line of genetic evidence in support of hypotheses that have emerged from archaeological analyses but remain contested, suggesting increasing regionalization at the end of the Pleistocene epoch.